DAF
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DAF API
daf.example
daf.access
daf.storage
daf.typing
daf.groups
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DAF
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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
A
Abs (class in daf.access.operations)
adapter() (daf.access.writers.DafWriter method)
adata (daf.storage.anndata.AnnDataReader attribute)
aggregate_group_data1d() (in module daf.groups)
aggregate_group_data2d() (in module daf.groups)
ALL_DTYPES (in module daf.typing.dtypes)
allow_maximal_open_files() (in module daf.storage.memory_mapping)
anndata_as_storage() (in module daf.storage.anndata)
AnnDataReader (class in daf.storage.anndata)
AnnDataWriter (class in daf.storage.anndata)
AnyData (in module daf.typing.unions)
AnyMajor (class in daf.typing.layouts)
as_dense() (in module daf.typing.dense)
as_layout() (in module daf.typing.layouts)
as_matrix() (in module daf.typing.matrices)
as_reader() (daf.access.readers.DafReader method)
(daf.access.writers.DafWriter method)
(daf.storage.interface.StorageReader method)
(daf.storage.interface.StorageWriter method)
as_vector() (in module daf.typing.vectors)
assert_data() (in module daf.typing.descriptions)
assign_group_values() (in module daf.groups)
axis_entries() (daf.access.readers.DafReader method)
(daf.storage.interface.StorageReader method)
axis_index() (daf.access.readers.DafReader method)
axis_indices() (daf.access.readers.DafReader method)
axis_names() (daf.access.readers.DafReader method)
(daf.storage.interface.StorageReader method)
axis_size() (daf.access.readers.DafReader method)
(daf.storage.interface.StorageReader method)
axis_slice_indices() (daf.storage.views.StorageView method)
AxisView (class in daf.storage.views)
B
BackAxis (class in daf.access.writers)
BackData (class in daf.access.writers)
base (daf.access.readers.DafReader attribute)
(daf.storage.views.StorageView attribute)
base_axis() (daf.storage.views.StorageView method)
base_data1d() (daf.storage.views.StorageView method)
base_data2d() (daf.storage.views.StorageView method)
base_item() (daf.storage.views.StorageView method)
be_dense() (in module daf.typing.dense)
be_dense_in_columns() (in module daf.typing.dense)
be_dense_in_rows() (in module daf.typing.dense)
be_frame() (in module daf.typing.frames)
be_frame_in_columns() (in module daf.typing.frames)
be_frame_in_rows() (in module daf.typing.frames)
be_known() (in module daf.typing.unions)
be_known1d() (in module daf.typing.unions)
be_known2d() (in module daf.typing.unions)
be_matrix() (in module daf.typing.matrices)
be_matrix_in_columns() (in module daf.typing.matrices)
be_matrix_in_rows() (in module daf.typing.matrices)
be_optimal() (in module daf.typing.optimization)
be_proper() (in module daf.typing.unions)
be_proper1d() (in module daf.typing.unions)
be_proper2d() (in module daf.typing.unions)
be_proper_in_columns() (in module daf.typing.unions)
be_proper_in_rows() (in module daf.typing.unions)
be_series() (in module daf.typing.series)
be_sparse() (in module daf.typing.sparse)
be_sparse_in_columns() (in module daf.typing.sparse)
be_sparse_in_rows() (in module daf.typing.sparse)
be_vector() (in module daf.typing.vectors)
BLOCK_SIZE (in module daf.typing.layouts)
bytes_as_ndarray() (in module daf.storage.memory_mapping)
C
cache (daf.storage.views.StorageView attribute)
canonical (daf.access.operations.Operation attribute)
Ceil (class in daf.access.operations)
chain (daf.access.readers.DafReader attribute)
(daf.storage.chains.StorageChain attribute)
Clip (class in daf.access.operations)
COLUMN_MAJOR (in module daf.typing.layouts)
COMPLETE_DATA (in module daf.access.writers)
computation() (daf.access.writers.DafWriter method)
(in module daf.access.writers)
contiguous_axis (daf.typing.layouts.AnyMajor attribute)
copy2d() (in module daf.typing.layouts)
copy_on_error (daf.access.writers.BackAxis property)
(daf.access.writers.BackData property)
count_group_members() (in module daf.groups)
count_group_values() (in module daf.groups)
create_axis() (daf.access.writers.DafWriter method)
(daf.storage.interface.StorageWriter method)
create_dense_in_rows() (daf.access.writers.DafWriter method)
(daf.storage.interface.StorageWriter method)
create_group_axis() (in module daf.groups)
create_memory_mapped_array() (in module daf.storage.memory_mapping)
cs_matrix (class in daf.typing.fake_sparse)
D
daf
module
daf.access
module
daf.access.operations
module
daf.access.readers
module
daf.access.writers
module
daf.example
module
daf.groups
module
daf.storage
module
daf.storage.anndata
module
daf.storage.chains
module
daf.storage.files
module
daf.storage.h5fs
module
daf.storage.interface
module
daf.storage.memory
module
daf.storage.memory_mapping
module
daf.storage.none
module
daf.storage.views
module
daf.typing
module
daf.typing.dense
module
daf.typing.descriptions
module
daf.typing.dtypes
module
daf.typing.fake_pandas
module
daf.typing.fake_sparse
module
daf.typing.frames
module
daf.typing.freezing
module
daf.typing.layouts
module
daf.typing.matrices
module
daf.typing.optimization
module
daf.typing.series
module
daf.typing.sparse
module
daf.typing.unions
module
daf.typing.vectors
module
DAF_EXAMPLE_PATH (in module daf.example)
DafReader (class in daf.access.readers)
DafWriter (class in daf.access.writers)
data1d_names() (daf.access.readers.DafReader method)
(daf.storage.interface.StorageReader method)
data2d_names() (daf.access.readers.DafReader method)
(daf.storage.interface.StorageReader method)
data_description() (in module daf.typing.descriptions)
DataFrame (class in daf.typing.fake_pandas)
default (daf.access.writers.BackData property)
Dense (in module daf.typing.dense)
dense_to_dense() (daf.access.operations.ElementWise method)
(daf.access.operations.Reformat method)
dense_to_sparse() (daf.access.operations.ElementWise method)
(daf.access.operations.Reformat method)
dense_to_vector() (daf.access.operations.Reduction method)
DenseInColumns (in module daf.typing.dense)
DenseInRows (in module daf.typing.dense)
densifies (daf.access.operations.ElementWise attribute)
Densify (class in daf.access.operations)
derived (daf.access.readers.DafReader attribute)
description() (daf.access.readers.DafReader method)
(daf.storage.interface.StorageReader method)
dtype (daf.access.operations.Operation attribute)
DType (in module daf.typing.dtypes)
dtype_of() (in module daf.typing.dtypes)
DTypes (in module daf.typing.dtypes)
E
ElementWise (class in daf.access.operations)
entries (daf.storage.views.AxisView property)
ENTRIES_DTYPES (in module daf.typing.dtypes)
exists_memory_mapped_array() (in module daf.storage.memory_mapping)
exists_memory_mapped_sparse() (in module daf.storage.memory_mapping)
exposed_axis() (daf.storage.views.StorageView method)
exposed_data1d() (daf.storage.views.StorageView method)
exposed_data2d() (daf.storage.views.StorageView method)
exposed_item() (daf.storage.views.StorageView method)
F
fast_all_close() (in module daf.typing.layouts)
FilesReader (class in daf.storage.files)
FilesWriter (class in daf.storage.files)
FIXED_DTYPES (in module daf.typing.dtypes)
float_dtype_for() (in module daf.access.operations)
FLOAT_DTYPES (in module daf.typing.dtypes)
Floor (class in daf.access.operations)
Fraction (class in daf.access.operations)
Frame (in module daf.typing.frames)
FrameInColumns (in module daf.typing.frames)
FrameInRows (in module daf.typing.frames)
freeze() (in module daf.typing.freezing)
G
get_columns() (daf.access.readers.DafReader method)
get_data1d() (daf.storage.interface.StorageReader method)
get_data2d() (daf.storage.interface.StorageReader method)
get_frame() (daf.access.readers.DafReader method)
get_item() (daf.access.readers.DafReader method)
(daf.storage.interface.StorageReader method)
get_matrix() (daf.access.readers.DafReader method)
get_series() (daf.access.readers.DafReader method)
get_vector() (daf.access.readers.DafReader method)
group (daf.storage.h5fs.H5fsReader attribute)
H
H5fsReader (class in daf.storage.h5fs)
H5fsWriter (class in daf.storage.h5fs)
has_axis() (daf.access.readers.DafReader method)
(daf.storage.interface.StorageReader method)
has_data() (daf.access.readers.DafReader method)
has_data1d() (daf.access.readers.DafReader method)
(daf.storage.interface.StorageReader method)
has_data2d() (daf.access.readers.DafReader method)
(daf.storage.interface.StorageReader method)
has_dtype() (in module daf.typing.dtypes)
has_item() (daf.access.readers.DafReader method)
(daf.storage.interface.StorageReader method)
has_layout() (in module daf.typing.layouts)
I
INT_DTYPES (in module daf.typing.dtypes)
is_dense() (in module daf.typing.dense)
is_dense_in_columns() (in module daf.typing.dense)
is_dense_in_rows() (in module daf.typing.dense)
is_dtype() (in module daf.typing.dtypes)
is_frame() (in module daf.typing.frames)
is_frame_in_columns() (in module daf.typing.frames)
is_frame_in_rows() (in module daf.typing.frames)
is_frozen() (in module daf.typing.freezing)
is_known() (in module daf.typing.unions)
is_known1d() (in module daf.typing.unions)
is_known2d() (in module daf.typing.unions)
is_matrix() (in module daf.typing.matrices)
is_matrix_in_columns() (in module daf.typing.matrices)
is_matrix_in_rows() (in module daf.typing.matrices)
is_optimal() (in module daf.typing.optimization)
is_proper() (in module daf.typing.unions)
is_proper1d() (in module daf.typing.unions)
is_proper2d() (in module daf.typing.unions)
is_proper_in_columns() (in module daf.typing.unions)
is_proper_in_rows() (in module daf.typing.unions)
is_series() (in module daf.typing.series)
is_sparse() (in module daf.typing.sparse)
is_sparse_in_columns() (in module daf.typing.sparse)
is_sparse_in_rows() (in module daf.typing.sparse)
is_vector() (in module daf.typing.vectors)
item_names() (daf.access.readers.DafReader method)
(daf.storage.interface.StorageReader method)
K
Known (in module daf.typing.unions)
Known1D (in module daf.typing.unions)
Known2D (in module daf.typing.unions)
KnownT (in module daf.typing.optimization)
L
Log (class in daf.access.operations)
M
Matrix (in module daf.typing.matrices)
MatrixInColumns (in module daf.typing.matrices)
MatrixInRows (in module daf.typing.matrices)
Max (class in daf.access.operations)
Mean (class in daf.access.operations)
MemoryStorage (class in daf.storage.memory)
Min (class in daf.access.operations)
MMAP_CACHE (in module daf.storage.memory_mapping)
mmap_file() (in module daf.storage.memory_mapping)
module
daf
daf.access
daf.access.operations
daf.access.readers
daf.access.writers
daf.example
daf.groups
daf.storage
daf.storage.anndata
daf.storage.chains
daf.storage.files
daf.storage.h5fs
daf.storage.interface
daf.storage.memory
daf.storage.memory_mapping
daf.storage.none
daf.storage.views
daf.typing
daf.typing.dense
daf.typing.descriptions
daf.typing.dtypes
daf.typing.fake_pandas
daf.typing.fake_sparse
daf.typing.frames
daf.typing.freezing
daf.typing.layouts
daf.typing.matrices
daf.typing.optimization
daf.typing.series
daf.typing.sparse
daf.typing.unions
daf.typing.vectors
most_frequent() (in module daf.groups)
N
name (daf.access.readers.DafReader attribute)
(daf.access.writers.BackAxis property)
(daf.access.writers.BackData property)
(daf.storage.interface.StorageReader attribute)
(daf.storage.views.AxisView property)
(daf.typing.layouts.AnyMajor attribute)
NO_STORAGE (in module daf.storage.none)
nop (daf.access.operations.ElementWise attribute)
NUM_DTYPES (in module daf.typing.dtypes)
numpy_flag (daf.typing.layouts.AnyMajor attribute)
numpy_order (daf.typing.layouts.AnyMajor attribute)
O
open_memory_mapped_array() (in module daf.storage.memory_mapping)
open_memory_mapped_sparse() (in module daf.storage.memory_mapping)
Operation (class in daf.access.operations)
operation() (in module daf.access.operations)
optimize() (in module daf.typing.optimization)
optional (daf.access.writers.BackAxis property)
(daf.access.writers.BackData property)
overwrite (daf.access.writers.BackData property)
(daf.storage.views.AxisView property)
P
parse_bool_parameter() (in module daf.access.operations)
parse_float_parameter() (in module daf.access.operations)
parse_int_parameter() (in module daf.access.operations)
parse_number_parameter() (in module daf.access.operations)
path (daf.storage.files.FilesReader attribute)
prefix() (in module daf.storage.interface)
Proper (in module daf.typing.unions)
Proper1D (in module daf.typing.unions)
Proper2D (in module daf.typing.unions)
ProperInColumns (in module daf.typing.unions)
ProperInRows (in module daf.typing.unions)
ProperT (in module daf.typing.freezing)
R
Reduction (class in daf.access.operations)
Reformat (class in daf.access.operations)
remove_memory_mapped_array() (in module daf.storage.memory_mapping)
remove_memory_mapped_sparse() (in module daf.storage.memory_mapping)
Round (class in daf.access.operations)
ROW_MAJOR (in module daf.typing.layouts)
S
Series (class in daf.typing.fake_pandas)
set_data1d() (daf.access.writers.DafWriter method)
set_data2d() (daf.access.writers.DafWriter method)
set_item() (daf.access.writers.DafWriter method)
(daf.storage.interface.StorageWriter method)
set_matrix() (daf.storage.interface.StorageWriter method)
set_vector() (daf.storage.interface.StorageWriter method)
Significant (class in daf.access.operations)
Sparse (in module daf.typing.sparse)
sparse_class (daf.typing.layouts.AnyMajor attribute)
sparse_class_name (daf.typing.layouts.AnyMajor attribute)
sparse_to_dense() (daf.access.operations.ElementWise method)
(daf.access.operations.Reformat method)
sparse_to_sparse() (daf.access.operations.ElementWise method)
(daf.access.operations.Reformat method)
sparse_to_vector() (daf.access.operations.Reduction method)
SparseInColumns (in module daf.typing.sparse)
SparseInRows (in module daf.typing.sparse)
sparsifies (daf.access.operations.ElementWise attribute)
Sparsify (class in daf.access.operations)
spmatrix (class in daf.typing.fake_sparse)
Std (class in daf.access.operations)
storage (daf.access.writers.DafWriter attribute)
storage_as_anndata() (in module daf.storage.anndata)
StorageChain (class in daf.storage.chains)
StorageReader (class in daf.storage.interface)
StorageView (class in daf.storage.views)
StorageWriter (class in daf.storage.interface)
STR_DTYPE (in module daf.typing.dtypes)
suffix() (in module daf.storage.interface)
Sum (class in daf.access.operations)
T
track (daf.storage.views.AxisView property)
transpose_name() (in module daf.access.readers)
U
unfreeze() (in module daf.typing.freezing)
unfrozen() (in module daf.typing.freezing)
update() (daf.storage.interface.StorageWriter method)
V
Var (class in daf.access.operations)
Vector (in module daf.typing.vectors)
vector_to_scalar() (daf.access.operations.Reduction method)
vector_to_vector() (daf.access.operations.ElementWise method)
(daf.access.operations.Reformat method)
verify_has() (daf.access.readers.DafReader method)
view() (daf.access.readers.DafReader method)
W
why_not_optimal() (in module daf.typing.optimization)
write_memory_mapped_sparse() (in module daf.storage.memory_mapping)
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